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Table 2 NMR/NAMFIS and X-ray structure determined conformations of Taxol evaluated energetically by six force fields in the gas phase and two solvation continuum models; Relative energies, kcal/mol.a

From: Calculated conformer energies for organic molecules with multiple polar functionalities are method dependent: Taxol (case study)

 

MMFF

AMBER*

MM2*

MM3*

MM3(96)

MM3(2000)

 

Gas

CHC13

H2O

Gas

CHC13

H2O

Gas

CHC13

H2O

Gas

CHC13

H2O

Gas

Gas

1

0.0

4.2

1.1

4.1

4.4

4.5

4.8

3.1

0.0

5.9

2.0

1.6

4.2

3.5

2

5.8

8.9

7.5

4.0

8.1

8.0

6.6

2.4

5.4

0.0

0.0

2.5

0.0

0.0

3

1.5

6.6

6.6

8.1

2.0

0.0

8.8

6.0

4.7

10.4

9.1

6.1

16.0

15.2

4

0.0

0.0

0.0

2.5

0.0

3.9

0.0

0.0

5.8

2.1

0.6

2.4

4.9

3.6

5

3.6

6.0

1.7

1.2

0.1

0.5

3.5

0.6

3.9

3.3

1.4

0.0

1.5

0.9

6b

2.5

6.9

6.0

0.0

1.4

1.5

4.8

1.9

6.2

5.6

2.7

1.4

1.8

1.2

7b

2.1

5.6

6.3

5.4

5.6

7.3

11.3

5.0

11.9

12.8

8.5

8.3

4.3

6.8

  1. a Each structure was optimized with the indicated force field and the accompanying GBSA solvation model. [2b]b Taxol conformations determined in the solid state;15 optimized using AMBER* with all non-terpenoid core dihedral angles frozen; 6 polar; 7 extended.